Alex L. Kolodkin

Publications

• Microtubule-binding Protein MAP1B Regulates Interstitial Axon Branching of Cortical Neurons Via the Tubulin Tyrosination Cycle
  The EMBO Journal. Apr, 2024  |   Pubmed ID: 38388748
• Teneurin-3 Regulates the Generation of Non-image-forming Visual Circuitry and Responsiveness to Light in the Suprachiasmatic Nucleus
  PLoS Biology. Dec, 2023  |   Pubmed ID: 38048352
• Drebrin Regulates Collateral Axon Branching in Cortical Layer II/III Somatosensory Neurons
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Nov, 2023  |   Pubmed ID: 37798130
• Retinal Ganglion Cell Repopulation for Vision Restoration in Optic Neuropathy: a Roadmap from the RReSTORe Consortium
  Molecular Neurodegeneration. Sep, 2023  |   Pubmed ID: 37735444
• Palmitoylation Regulates Neuropilin-2 Localization and Function in Cortical Neurons and Conveys Specificity to Semaphorin Signaling Via Palmitoyl Acyltransferases
  ELife. Apr, 2023  |   Pubmed ID: 37010951
• Corrigendum to "Characterization of Non-alpha Retinal Ganglion Cell Injury Responses Reveals a Possible Block to Restoring IpRGC Function"
  Experimental Neurology. Jan, 2023  |   Pubmed ID: 36457222
• Circuit Engineering: Rewiring Adult Outer Retina Connections
  Current Biology : CB. Nov, 2022  |   Pubmed ID: 36413972
• The Transcription Factor Tbx5 Regulates Direction-selective Retinal Ganglion Cell Development and Image Stabilization
  Current Biology : CB. Oct, 2022  |   Pubmed ID: 35998637
• Characterization of Non-alpha Retinal Ganglion Cell Injury Responses Reveals a Possible Block to Restoring IpRGC Function
  Experimental Neurology. Nov, 2022  |   Pubmed ID: 35870522
• Central Nervous System Regeneration
  Cell. Jan, 2022  |   Pubmed ID: 34995518
• Development of the Vertebrate Retinal Direction-selective Circuit
  Developmental Biology. Sep, 2021  |   Pubmed ID: 34118273
• Revisiting and Refining Roles of Neural Guidance Cues in Circuit Assembly
  Current Opinion in Neurobiology. Feb, 2021  |   Pubmed ID: 32823181
• Repurposing Developmental Mechanisms in the Adult Nervous System
  Current Opinion in Genetics & Development. Dec, 2020  |   Pubmed ID: 32485480
• Binary Fate Choice Between Closely Related Interneuronal Types Is Determined by a Fezf1-Dependent Postmitotic Transcriptional Switch
  Neuron. Feb, 2020  |   Pubmed ID: 31812516
• Semaphorin 2b Regulates Sleep-Circuit Formation in the Drosophila Central Brain
  Neuron. Oct, 2019  |   Pubmed ID: 31564592
• Genetic Access to Neurons in the Accessory Optic System Reveals a Role for Sema6A in Midbrain Circuitry Mediating Motion Perception
  The Journal of Comparative Neurology. Jan, 2019  |   Pubmed ID: 30076594
• Editorial Overview: Developmental Neuroscience (2018)
  Current Opinion in Neurobiology. Dec, 2018  |   Pubmed ID: 30449415
• Neuropilin-2/PlexinA3 Receptors Associate with GluA1 and Mediate Sema3F-Dependent Homeostatic Scaling in Cortical Neurons
  Neuron. Dec, 2017  |   Pubmed ID: 29154130
• Varicose and Cheerio Collaborate with Pebble to Mediate Semaphorin-1a Reverse Signaling in
  Proceedings of the National Academy of Sciences of the United States of America. Sep, 2017  |   Pubmed ID: 28894005
• The Laminar Organization of the Ellipsoid Body is Semaphorin-dependent and Prevents the Formation of Ectopic Synaptic Connections
  ELife. Jun, 2017  |   Pubmed ID: 28632130
• Netrin-Mediated Axon Guidance to the CNS Midline Revisited
  Neuron. May, 2017  |   Pubmed ID: 28521119
• Establishing Wiring Specificity in Visual System Circuits: From the Retina to the Brain
  Annual Review of Neuroscience. Jul, 2017  |   Pubmed ID: 28460185
• Wiring Visual Systems: Common and Divergent Mechanisms and Principles
  Current Opinion in Neurobiology. Feb, 2017  |   Pubmed ID: 28064004
• Sculpting Neural Circuits by Axon and Dendrite Pruning
  Annual Review of Cell and Developmental Biology. 2015  |   Pubmed ID: 26436703
• Axon Dynamics During Neocortical Laminar Innervation
  Cell Reports. Jul, 2015  |   Pubmed ID: 26146079
• Functional Assembly of Accessory Optic System Circuitry Critical for Compensatory Eye Movements
  Neuron. May, 2015  |   Pubmed ID: 25959730
• Semaphorins and the Dynamic Regulation of Synapse Assembly, Refinement, and Function
  Current Opinion in Neurobiology. Aug, 2014  |   Pubmed ID: 24598309
• Cas Adaptor Proteins Organize the Retinal Ganglion Cell Layer Downstream of Integrin Signaling
  Neuron. Feb, 2014  |   Pubmed ID: 24559672
• Function of the Drosophila Receptor Guanylyl Cyclase Gyc76C in PlexA-mediated Motor Axon Guidance
  Development (Cambridge, England). Jan, 2014  |   Pubmed ID: 24284209
• On and off Retinal Circuit Assembly by Divergent Molecular Mechanisms
  Science (New York, N.Y.). Nov, 2013  |   Pubmed ID: 24179230
• Sema6B, Sema6C, and Sema6D Expression and Function During Mammalian Retinal Development
  PloS One. 2013  |   Pubmed ID: 23646199
• SnapShot: Axon Guidance II
  Cell. Apr, 2013  |   Pubmed ID: 23622251
• Cbl-associated Protein Regulates Assembly and Function of Two Tension-sensing Structures in Drosophila
  Development (Cambridge, England). Feb, 2013  |   Pubmed ID: 23293294
• The Coordinate Regulation of Sensory Afferent CNS Targeting and CNS Longitudinal Tract Organization in Drosophila During Neural Development
  Journal of the Peripheral Nervous System : JPNS. Dec, 2012  |   Pubmed ID: 23279430
• The Control of Semaphorin-1a-mediated Reverse Signaling by Opposing Pebble and RhoGAPp190 Functions in Drosophila
  Neuron. Nov, 2012  |   Pubmed ID: 23177958
• The Extracellular Matrix Proteoglycan Perlecan Facilitates Transmembrane Semaphorin-mediated Repulsive Guidance
  Genes & Development. Oct, 2012  |   Pubmed ID: 23028146
• The RacGAP β2-Chimaerin Selectively Mediates Axonal Pruning in the Hippocampus
  Cell. Jun, 2012  |   Pubmed ID: 22726444
• Autism Spectrum Disorder Susceptibility Gene TAOK2 Affects Basal Dendrite Formation in the Neocortex
  Nature Neuroscience. Jun, 2012  |   Pubmed ID: 22683681
• Guidance-cue Control of Horizontal Cell Morphology, Lamination, and Synapse Formation in the Mammalian Outer Retina
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. May, 2012  |   Pubmed ID: 22593055
• Class 5 Transmembrane Semaphorins Control Selective Mammalian Retinal Lamination and Function
  Neuron. Aug, 2011  |   Pubmed ID: 21835343
• A Combinatorial Semaphorin Code Instructs the Initial Steps of Sensory Circuit Assembly in the Drosophila CNS
  Neuron. Apr, 2011  |   Pubmed ID: 21521614
• Transmembrane Semaphorin Signalling Controls Laminar Stratification in the Mammalian Retina
  Nature. Feb, 2011  |   Pubmed ID: 21270798
• Secreted Semaphorins Control Spine Distribution and Morphogenesis in the Postnatal CNS
  Nature. Dec, 2009  |   Pubmed ID: 20010807
• Semaphorin 3F is a Bifunctional Guidance Cue for Dopaminergic Axons and Controls Their Fasciculation, Channeling, Rostral Growth, and Intracortical Targeting
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Oct, 2009  |   Pubmed ID: 19812329
• Expression Patterns of Semaphorin7A and PlexinC1 During Rat Neural Development Suggest Roles in Axon Guidance and Neuronal Migration
  BMC Developmental Biology. 2007  |   Pubmed ID: 17727705
• Semaphorin Regulation of Cellular Morphology
  Annual Review of Cell and Developmental Biology. 2007  |   Pubmed ID: 17539753
• Descrambling Dscam Diversity
  Cell. May, 2006  |   Pubmed ID: 16678085
• Drosophila Plexin B is a Sema-2a Receptor Required for Axon Guidance
  Development (Cambridge, England). Jun, 2006  |   Pubmed ID: 16672342
• MICAL Flavoprotein Monooxygenases: Expression During Neural Development and Following Spinal Cord Injuries in the Rat
  Molecular and Cellular Neurosciences. Jan, 2006  |   Pubmed ID: 16230022
• Distinct Roles for Secreted Semaphorin Signaling in Spinal Motor Axon Guidance
  Neuron. Dec, 2005  |   Pubmed ID: 16364899
• High-resolution Structure of the Catalytic Region of MICAL (molecule Interacting with CasL), a Multidomain Flavoenzyme-signaling Molecule
  Proceedings of the National Academy of Sciences of the United States of America. Nov, 2005  |   Pubmed ID: 16275925
• Vascular Endothelial Growth Factor Controls Neuronal Migration and Cooperates with Sema3A to Pattern Distinct Compartments of the Facial Nerve
  Genes & Development. Nov, 2004  |   Pubmed ID: 15545635
• Differential Requirements for Semaphorin 3F and Slit-1 in Axonal Targeting, Fasciculation, and Segregation of Olfactory Sensory Neuron Projections
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Oct, 2004  |   Pubmed ID: 15483127
• The Drosophila Receptor Guanylyl Cyclase Gyc76C is Required for Semaphorin-1a-plexin A-mediated Axonal Repulsion
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Jul, 2004  |   Pubmed ID: 15282266
• Semaphorin 7A Promotes Axon Outgrowth Through Integrins and MAPKs
  Nature. Jul, 2003  |   Pubmed ID: 12879062
• Neuropilin-1 Conveys Semaphorin and VEGF Signaling During Neural and Cardiovascular Development
  Developmental Cell. Jul, 2003  |   Pubmed ID: 12852851
• Signaling at the Growth Cone: Ligand-receptor Complexes and the Control of Axon Growth and Guidance
  Annual Review of Neuroscience. 2003  |   Pubmed ID: 12677003
• Semaphorin Junction: Making Tracks Toward Neural Connectivity
  Current Opinion in Neurobiology. Feb, 2003  |   Pubmed ID: 12593985
• MICALs, a Family of Conserved Flavoprotein Oxidoreductases, Function in Plexin-mediated Axonal Repulsion
  Cell. Jun, 2002  |   Pubmed ID: 12110185
• Neuropilin-2 Mediates Axonal Fasciculation, Zonal Segregation, but Not Axonal Convergence, of Primary Accessory Olfactory Neurons
  Neuron. Mar, 2002  |   Pubmed ID: 11906695
• Characterization of Neuropilin-1 Structural Features That Confer Binding to Semaphorin 3A and Vascular Endothelial Growth Factor 165
  The Journal of Biological Chemistry. May, 2002  |   Pubmed ID: 11886873